Basic Information
VIS ID
TVIS44003702
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
24139464/22767143 (Hg38)
End
24139464/22767143 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/4080979; hsa-mir-155/Downstream/312141;
Nearest TSS
ENST00000624081/Upstream/247085; ENST00000421604/Downstream/298348;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1768898, chr21-CpG: 28/Downstream/2594651
Nearby gene
D21S2088E(-593962) ;
Upstream sequence
accattcatttattttattttaaaaatcttattataaatctgtcttggtataagaattgtcaacctgtaccaccatgagaacttttcaaactacagtaca
Downstream sequence
gtgttacatacagttccttttgcaatgtgttttacagactcaactcatttccaatattacttagatcaatacctttttcactaaccagtttcagtgagtt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate