Basic Information
VIS ID
TVIS44003734
Fusion event
HTLV-1-CRAT37 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
92025071/91481841 (Hg38)
End
92025071/91481841 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
CRAT37
Nearest miRNA
hsa-mir-10393/Upstream/1475000; hsa-mir-1302-10/Downstream/1422558;
Nearest TSS
ENST00000557528/Upstream/18504; ENST00000553410/Downstream/51050;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/184731, chr15-CpG: 153/Downstream/370942
Upstream sequence
tctgctcaggctgtgtaacaaaacacagactgggtggcttaagcatcaggcagtttattttctcacagttctagaggctggaagtccaagaccaaggtgc
Downstream sequence
tcatgtagttgggttcttggtgagggccttcctcctggcttgcagagcaccatctccttggcatgtgctcacacgatatgggagagagagagctttggtc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate