VISDB Viral Integration Site DataBase

VIS ID

TVIS44003739

Fusion event

HTLV-1-RAB11FIP4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

29835582/31508564 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-432-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-6799-5p ; hsa-mir-1193 ; hsa-mir-504-3p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-490-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-let-7f-5p ; hsa-mir-4458 ; hsa-let-7g-5p ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-let-7b-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-mir-619-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-6735-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-1266-3p ; hsa-mir-6872-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-374a-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1292-5p ; hsa-mir-4487 ; hsa-mir-4685-3p ; hsa-mir-6832-3p ; hsa-mir-4287 ; hsa-mir-6888-3p ; hsa-mir-3157-5p ; hsa-mir-4326 ; hsa-mir-431-5p ; hsa-mir-3120-5p ; hsa-mir-1827 ; hsa-mir-194-3p ; hsa-mir-2682-5p ; hsa-mir-3148 ; hsa-mir-3190-3p ; hsa-mir-34a-5p ; hsa-mir-34b-5p ; hsa-mir-34c-5p ; hsa-mir-3612 ; hsa-mir-4491 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-449c-5p ; hsa-mir-4657 ; hsa-mir-4695-5p ; hsa-mir-6124 ; hsa-mir-650 ; hsa-mir-6833-5p ; hsa-mir-208a-5p ; hsa-mir-208b-5p ; hsa-mir-27b-5p ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-4451 ; hsa-mir-4650-3p ; hsa-mir-526b-5p ; hsa-mir-552-5p

Nearest miRNA

hsa-mir-1180/Upstream/414139; hsa-mir-10226/Downstream/26319;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/19920, chr17-CpG: 76/Downstream/41051

Upstream sequence

AGTGGGTGCTACGTGAACTTGGACACAGGGGCCAAGGGCTGGACAGGTGTGGAATGTTGAGCCAGGCCCCACCGCCTTTGGGGCAGGCTGGATGTGCTGG

Downstream sequence

CCAGCCAGACCTGACACCTCTGGCCAGTGCCTGGGTGCACGCGGCCCGGGTCGGCCTCAGACCCTCCCTCTTGGTGCTTCCCAGGAGACCACTCGCTTAG