Basic Information
VIS ID
TVIS44003743
Fusion event
HTLV-1-LOC105371954 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
1390809/1390808 (Hg38)
End
1390809/1390808 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371954
Nearest miRNA
hsa-mir-8078/Upstream/1278469; hsa-mir-1-2/Downstream/2494545;
Nearest TSS
ENST00000575820/Upstream/31158; ENST00000583163/Downstream/1377;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/481235, chr18-CpG: 33/Downstream/1180479
Nearby gene
LINC00470(-31179) ;
Upstream sequence
ataaataaataaataaataaataaataaTAATAATCCATTTGCTAATTTTCTTTGTACATACTCTCCGTAACAAAACAAATTTGATGAGTTTGGATTTCG
Downstream sequence
TTTCCTTTTTTGTGGATCCATTCACACTACTTATTTCCTCAATAAATGTTATTACACAATCataatattgtattatatatatattttttCACATAAATAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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