Basic Information
VIS ID
TVIS44003751
Fusion event
HTLV-1-chr22 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27363077/26967114 (Hg38)
End
27363077/26967114 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/411791; hsa-let-7a-3/Downstream/953411;
Nearest TSS
ENST00000624155/Upstream/63774; ENST00000623027/Downstream/52255;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/209944, chr22-CpG: 16/Downstream/471350
Nearby gene
LINC01422(No orient, 46504)
Upstream sequence
tccctagtgccttccccagtgcctggtactcagaaggctctcaataaatgttggttgaataaaGAAGTGGGTGGATATAGGGGCTCATGGTTCAGTGTCT
Downstream sequence
CCCAGGCATTATACTAAGTTCAAGAGAGGGGTTGGCAGTTAGCAAGGAAAGTCAGTCATAATAATGATTCTTTGTATTTGGGCTGTGCTTCATAGTTTAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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