Basic Information
VIS ID
TVIS44003790
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
9196417/9085741 (Hg38)
End
9196417/9085741 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/696361; hsa-let-7e/Downstream/952613;
Nearest TSS
ENST00000633603/Upstream/104399; ENST00000429566/Downstream/1320;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/253297, chr19-CpG: 18/Downstream/7829
Nearby gene
OR1M1(+7504) ;
Upstream sequence
gcgagactccatctcaaaataataataataataatggtattgtggttatgctttcaaaaagagctttttgttttttgaagacataccaaaatcattatac
Downstream sequence
atatggaatttgctctgaaattatctctgggaagagagaggtcaaagtaggtaggacacagattcaacagaggcttgacttggtaggtgtggaagctgag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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