Basic Information
VIS ID
TVIS44003791
Fusion event
HTLV-1-PPM1G integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27630409/27407542 (Hg38)
End
27630409/27407542 (Hg38)
Orient
+
Location type
Intronic
Target gene
PPM1G
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-let-7b-5p ; hsa-mir-877-3p ; hsa-mir-484 ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-1301/Upstream/2078821; hsa-mir-10b/Downstream/588825;
Nearest TSS
ENST00000437798/Upstream/26752; ENST00000356442/Downstream/2013;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13969, chr2-CpG: 105/Downstream/1475
Upstream sequence
ttttgtagagacagggtttttgccatgttgcccaggctggtctcgaactcctgagctcaggtgatctgcctgcctcggcctcccaaaatgctgggattac
Downstream sequence
agacgtgagccactgcgcccagccTAGATATTTCTAATAGACAATTACATCTACCAAATAGTTATACTGTGTATGGTGGTGAAATATGAATGCTATGCTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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