Basic Information
VIS ID
TVIS44003810
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
110237590/110901891 (Hg38)
End
110237590/110901891 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/387976; hsa-mir-103a-1/Downstream/5353852;
Nearest TSS
ENST00000502646/Upstream/146771; ENST00000344895/Downstream/107008;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/162369, chr5-CpG: 29/Downstream/171115
Nearby gene
SLC25A46(+136729) ;
Upstream sequence
CTTAGCCATCCAAGCTAGAAACCTCTGTGCATGTTAAAAAATAATTTCTCCTCTACGATATACTGTATTTCCAAACTCCATTGAACATCCTTTTCTCCAT
Downstream sequence
CACAATTGCCATGACCACTCTAGGCCCCTTACAAATGCTCAGGTGTATTGCCATATCCCGTAACTGTTCTTGCTCTTTCCAGACTATCCCTCTCCAATAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate