Basic Information
VIS ID
TVIS44003813
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
50189804/50222091 (Hg38)
End
50189804/50222091 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5024321; hsa-mir-10524/Downstream/1922258;
Nearest TSS
ENST00000381078/Upstream/128380; ENST00000426547/Downstream/291944;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/670618, chr6-CpG: 57/Downstream/492530
Nearby gene
DEFB112(-173440) ;
Upstream sequence
TGATGCCTCAGGCATGTTCAGCGTGTTGCTCAGGTCAGTTCATTTCAATACTTAATTTGTGGCACTTCATTTAATGGAATCATTTAACACCTAAAAAGTA
Downstream sequence
ATTATGAACATGAACAAATTTGATTTCCTGGGGTTGGTATTTGACATCTCCAAAACACTGAAATCCCTACTGCTGGCTTAAACTATGTTTGGCACTCGGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate