Basic Information
VIS ID
TVIS44003823
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
24992332/25134817 (Hg38)
End
24992332/25134817 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/180950; hsa-mir-10400/Downstream/210585;
Nearest TSS
ENST00000518652/Upstream/142815; ENST00000410074/Downstream/49906;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/133905, chr8-CpG: 135/Downstream/49463
Nearby gene
DOCK5(+49955) ;
Upstream sequence
tgtaaagcctggtagagccatggtaaggcattctgattttattctacatatgacaaaccgctgaagaacccaaattaggggatggtcatgattagattta
Downstream sequence
atattttcaaaaaatATACATTGCTAGAtttagattttatgtatctgtgttcatggcaagattagcttaaaactttcctcttattgccttgaatggtttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate