Basic Information
VIS ID
TVIS44003860
Fusion event
HTLV-1-FGGY integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
59974691/59509019 (Hg38)
End
59974691/59509019 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
FGGY
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12136/Upstream/4283296; hsa-mir-101-1/Downstream/224208;
Nearest TSS
ENST00000473358/Upstream/115811; ENST00000485720/Downstream/3297;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/211897, chr1-CpG: 90/Downstream/305396
Upstream sequence
gactgggtagagggaaaagagctgaactgaggtgcattccTGCAGCACCTTGGTGAACTCAGCAGAGTCTCTGGAGTGAGTGGTGTCTATCAGAgccctt
Downstream sequence
ctgcctctgctttgcaaagtcaccaggtactggctgtcctgggaggtgcatcaccttgggaaggcagctctctgcaactgaggcaggccctggaacatct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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