Basic Information
VIS ID
TVIS44003910
Fusion event
HTLV-1-LINC01182 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
13893617/13891993 (Hg38)
End
13893617/13891993 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
LINC01182
Nearest miRNA
hsa-mir-12113/Upstream/264036; hsa-mir-12115/Downstream/6636282;
Nearest TSS
ENST00000502981/Upstream/71883; ENST00000514339/Downstream/242943;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/263962, chr4-CpG: 31/Downstream/970891
Upstream sequence
TCATGCATTCTCCTCCTCCACTGAGTCTCCGCTTGCCTCATGTGAGGGTTGATGGCTTTGGCTTTACTCCAACTTCCTGCATCTTCTCTGACTGTGTCCT
Downstream sequence
GATTTTGACCATGAGCCTTGTTCTTGACAACTGCCTTGTCTCTGGTCCTGGACTCCTACCAGCCCTCCCTCCTCTGAGGAAACCAGACCTGAGCAGGCAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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