Basic Information
VIS ID
TVIS44003939
Fusion event
HTLV-1-LOC105370500 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
53285312/52818594 (Hg38)
End
53285312/52818594 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370500
Nearest miRNA
hsa-mir-208a/Upstream/2518648; hsa-mir-1185-1/Downstream/1129833;
Nearest TSS
ENST00000550708/Upstream/26926; ENST00000556988/Downstream/1440;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/26693, chr14-CpG: 136/Downstream/131796
Nearby gene
GNPNAT1(-26926) ;
Upstream sequence
tgcttggccctgttggtctattatctatttttTTTATATCTATCATCttttttttttttttttttttttgagacagagtctcactctgtcgcccaggctg
Downstream sequence
gagtgcagtggcacgatctcggatcactgcaagctctgcctccccagttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcaccc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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