Basic Information
VIS ID
TVIS44003972
Fusion event
HTLV-1-LOC110091776 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
15283322/13911001 (Hg38)
End
15283322/13911001 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC110091776
Nearest miRNA
hsa-mir-10396a/Upstream/186727; hsa-let-7c/Downstream/2628088;
Nearest TSS
ENST00000624081/Upstream/141069; ENST00000448463/Downstream/116420;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/85324, chr21-CpG: 19/Downstream/26311
Nearby gene
ANKRD20A11P(No orient, 32774)
Upstream sequence
gataccatgacaggtatacagcagggcactactggaacacacagaagggacacctacccacttttatgtcaacatcatgggctttctgatggaggagata
Downstream sequence
tcataggttgatacctgaaggacaaggaaaagcttgccagatagagggaagaggcaaaggcaaagagcctgagatgaggaagagccctgcagagttccac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate