Basic Information
VIS ID
TVIS44003979
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
21929033/22429704 (Hg38)
End
21929033/22429704 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/3085130; hsa-mir-10226/Downstream/4864206;
Nearest TSS
ENST00000595228/Upstream/9682; ENST00000540040/Downstream/93407;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/212183, chr17-CpG: 27/Downstream/5670
Nearby gene
FLJ36000(+15963) ;
Upstream sequence
cccaagtagctgagactacaggtgcccgccaccacacctggctaattttttgtatttttagtagagacggagtttcaccgtattagccaggatggtctcg
Downstream sequence
atctcctgacctcatgatccatcctcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccagccTACAATTCTTTTTTGTTTTAATT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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