Basic Information
VIS ID
TVIS44003984
Fusion event
HTLV-1-LOC107985400 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
25685135/25704499 (Hg38)
End
25685135/25704499 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985400
Nearest miRNA
hsa-mir-103a-2/Upstream/7233808; hsa-mir-1-1/Downstream/503687;
Nearest TSS
ENST00000382410/Upstream/7658; ENST00000376445/Downstream/46719;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/7351, chr20-CpG: 25/Downstream/305256
Nearby gene
ZNF337(-7595) ;
Upstream sequence
ggatagttagctcttcttgatgcattgatccctttaccattacgtaatggccttgtctcttttgatctttgttggtttaaactctgttttgtcagagact
Downstream sequence
aggattgcaacccctgctttttttttcctttccatttgcttggtaaatattcctccatccctttattttgagcatatgtgagtctttgcacatgagatgc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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