VISDB Viral Integration Site DataBase

VIS ID

TVIS44003985

Fusion event

HTLV-1-NQO2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr6

Cytoband

p25.2

Reference genome

Start

End

3002159/3001925 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320a ; hsa-mir-6789-3p ; hsa-mir-4707-3p ; hsa-mir-4258 ; hsa-mir-941 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-7977 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-4267 ; hsa-mir-6890-3p ; hsa-mir-4284 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-3194-3p ; hsa-mir-2276-3p ; hsa-mir-6728-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6796-3p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-122-3p ; hsa-mir-4701-5p ; hsa-mir-4715-3p ; hsa-mir-4775 ; hsa-mir-1227-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4735-5p ; hsa-mir-6765-3p ; hsa-mir-1228-3p ; hsa-mir-576-3p ; hsa-mir-3187-3p ; hsa-mir-6772-3p ; hsa-mir-9-3p ; hsa-mir-4529-5p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-3190-5p ; hsa-mir-1278 ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-5095 ; hsa-mir-7151-3p

Nearest miRNA

hsa-mir-4645/Upstream/147818; hsa-mir-10398/Downstream/2146308;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/1639, chr6-CpG: 83/Downstream/61652

Upstream sequence

GGTGCATAGTTTCTAAAAAGGGAGAGAACTGTCACTGCTGTGGATGGGGTGCCAAGGGAAGTGCCTGGGGTCAAGTGAACAGTGACACAACTGCAAGTCA

Downstream sequence

AGAGCCTGTGTTGGAGTCTTTCCCCACTATTTCAAATAGTATAGAAAATAGAGCTGAGTCACTCAAATAGAGCTGAGTTAGTCACTCAGCTCTTGGACCT