Basic Information
VIS ID
TVIS44004024
Fusion event
HTLV-1-LOC107985270 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
32706613/32215707 (Hg38)
End
32706613/32215707 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985270
Nearest miRNA
hsa-mir-10395/Upstream/11816353; hsa-let-7e/Downstream/2906993;
Nearest TSS
ENST00000633603/Upstream/109791; ENST00000587084/Downstream/129887;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/858404, chr19-CpG: 27/Downstream/8771
Upstream sequence
aataatagatctagATTAGATTTTATTCCTTGAGACCAatgggccttctggtcatctgaagagtatggaccccctctaaaaataatgaaatgaagtaaaa
Downstream sequence
tgaaatacgtaagttacaaactcttgaagtatgattatcaaaatatttcacaaaaaacaaatttgtgacataacaatagatgtgcatccttatgtactta
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate