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TVIS44004040
Basic Information
VIS ID
TVIS44004040
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
98959824/98566046 (Hg38)
End
98959824/98566046 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/570598; hsa-mir-1178/Downstream/1623838;
Nearest TSS
ENST00000382841/Upstream/21407;
ENST00000551265/Downstream/27545;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/49563
,
chr12-CpG: 93/Downstream/27369
Nearby gene
TMPO
(+15667) ;
Upstream sequence
agttcaagaccagcctggccaacatggcgaaaccccaactctattaaaaatgcaaaaattagcagggtgtggtggtgtgtgcctgaagtcccagctactt
Downstream sequence
tgaaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgagcaacagagtgcgatt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Sample Information
×
Sample name
ATL60-R
Sample type
Nontumor
Age
42
Gender
Male
CpG Island Information
×
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