Basic Information
VIS ID
TVIS44004048
Fusion event
HTLV-1-LOC101930010 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
56713730/56848932 (Hg38)
End
56713730/56848932 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101930010
Nearest miRNA
hsa-mir-10398/Upstream/3571861; hsa-mir-10524/Downstream/541200;
Nearest TSS
ENST00000381078/Upstream/4930; ENST00000370748/Downstream/2785;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/4564, chr6-CpG: 166/Downstream/105143
Upstream sequence
gagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaaaaattagctgggcatggtggtgcatgcctgtggtcccagctactt
Downstream sequence
gggaggctgaggcaggagaaaacttgaacccaagaggcggaggttgcagtgagccaagattatgccactgcactccagtctgggtgacagagagagaatc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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