Basic Information
VIS ID
TVIS44004093
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
812655/766715 (Hg38)
End
812655/766715 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/124937; hsa-mir-107/Downstream/1309304;
Nearest TSS
ENST00000439456/Upstream/22723; ENST00000435531/Downstream/48295;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/39941, chr10-CpG: 51/Downstream/26953
Nearby gene
LARP4B(-40199) ;
Upstream sequence
CATTACACAGGCGCATATACTCATAGTATCCCCACTTGATCATTACATGTGTGCATATACTCATAGTATCCCCACTTGATCATTACACAGGTGCATATAC
Downstream sequence
TCATAGTATCTCCACTTGATCATTACACATGTGCATATACTCATAGTATCCCCACTTGATCATTACACGTGTGCATATACTCATAGTATCCCCACTTGAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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