Basic Information
VIS ID
TVIS44004097
Fusion event
HTLV-1-LINC02755 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
29509823/29488276 (Hg38)
End
29509823/29488276 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02755
Nearest miRNA
hsa-mir-210/Upstream/1010728; hsa-let-7a-2/Downstream/5453561;
Nearest TSS
ENST00000527297/Upstream/42789; ENST00000530389/Downstream/30800;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1377602, chr11-CpG: 25/Downstream/527849
Nearby gene
LINC01616(No orient, 491845)
Upstream sequence
ACATATGCTGTATATATAATGCATACAAATTTGATCCAGCAATTCCAATGGTTGAAATTTAATCCAATAGATATACCATAGGGCTCATGGCTACATTGTT
Downstream sequence
TGTAATACCAAAATACAAGCTTGTACTCTCTTTCTCTCTTTcacacacacacacacgcacgcacacacacacacacacacacacCCCAAACTGATGGTCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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