VISDB Viral Integration Site DataBase

VIS ID

TVIS44004140

Fusion event

HTLV-1-RPL28 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.42

Reference genome

Start

End

55900666/55389298 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-26b-5p ; hsa-mir-766-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-374a-3p ; hsa-mir-3686 ; hsa-mir-297 ; hsa-mir-361-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-567 ; hsa-mir-3649 ; hsa-mir-659-5p ; hsa-mir-3182 ; hsa-mir-4742-3p ; hsa-mir-1237-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-4501 ; hsa-mir-1273e ; hsa-mir-4443 ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-17-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-1237-5p ; hsa-mir-1254 ; hsa-mir-1908-5p ; hsa-mir-3116 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-4488 ; hsa-mir-4697-5p ; hsa-mir-637 ; hsa-mir-661 ; hsa-mir-663a ; hsa-mir-6787-5p ; hsa-mir-6816-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6852-5p ; hsa-mir-6882-3p

Nearest miRNA

hsa-let-7e/Upstream/1056; hsa-mir-10394/Downstream/2945390;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2502, chr19-CpG: 27/Downstream/12144

Upstream sequence

attagctgggtgtggtggtgcaccgcctgtggtcccagctcctcagaggttgagtagaggctgaggtgagcggagcacttgagccaagagtatgaggctg

Downstream sequence

cagtgagcccatgagccccaccactacactccagcctggaagacaCCATGACACACAGTGAGGCCTGGATGGGGAAAGAGTCCTGCTGTTGATCCTcaca