Basic Information
VIS ID
TVIS44004154
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
74310824/73398589 (Hg38)
End
74310824/73398589 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/9019332; hsa-mir-10400/Downstream/1149954;
Nearest TSS
ENST00000518652/Upstream/29294; ENST00000522703/Downstream/21415;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/102645, chr8-CpG: 35/Downstream/50225
Nearby gene
STAU2-AS1(No orient, 21485)
Upstream sequence
ttgtatttttcatagaggtggagtttcaccatgttgtccaggctggtctcaaactcctaacttcaagtgatccggctgcctcggcctcccaaagtgctgc
Downstream sequence
aattacaggcatgagccaccgcccccagtcGttcagcacataaattataagggagagacagaatgagagaacatagaaattttaactaacacagcaacca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate