Basic Information
VIS ID
TVIS44004161
Fusion event
HTLV-1-LOC105377307 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.22
Reference genome
GRCh37/hg19
Start
83215029/82293876 (Hg38)
End
83215029/82293876 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377307
Nearest miRNA
hsa-mir-12113/Upstream/5718250; hsa-mir-1243/Downstream/459461;
Nearest TSS
ENST00000502981/Upstream/249632; ENST00000609552/Downstream/51664;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/8685, chr4-CpG: 105/Downstream/79816
Nearby gene
HNRNPD(-59438) ;
Upstream sequence
ATGTGTAACTTTCAGATAGATGGTACAATTAGCAACTCTTTTTCAGCGGACTCCACCAAATTTTTAAATAAAAATGTTTTCTAGGTGGAGATTATGTGTA
Downstream sequence
TAAATCAATATAATCATTAAAAACATTTGTAGCATATTGTATTCATGATATGATGTGAAGGATTTACACTGAAAGGGTTCATATGTTAAATTTTCTGCCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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