Basic Information
VIS ID
TVIS44004168
Fusion event
HTLV-1-ARHGAP33 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
End
36269949/35779047 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10395/Upstream/433420; hsa-let-7e/Downstream/3630576;
Upstream sequence
cAGAGACGAGCTAGGGCAGTGTGGGAGGGCAGTGGGCTCTCTCACGTCCACTCACAGAGGCCCACTCTGACAACCTGCCCCCAGATGCTGGTGCCACTGC
Downstream sequence
TGCTGCAGTACCTGGAGACACTGTCAGGACTGGTGGACAGTAACCTCAACTGCGGGCCTGTGCTCACCTGGATGGAGGTGGGCCTGGGCAGGGGGCTTGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate