Basic Information
VIS ID
TVIS44004172
Fusion event
HTLV-1-CFAP97D2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114967508/114202033 (Hg38)
End
114967508/114202033 (Hg38)
Orient
-
Location type
Intronic
Target gene
CFAP97D2
Nearest miRNA
hsa-mir-1267/Upstream/939034; hsa-mir-4502/Downstream/42472;
Nearest TSS
ENST00000623511/Upstream/2329; ENST00000494766/Downstream/13802;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1668, chr13-CpG: 68/Downstream/32640
Nearby gene
CDC16(+32854) ;
Upstream sequence
gtttgtcatatgatacacccatgacaccagcaccccagtcaagacagtaaacatattcatcactccccaggtttccctgagcctttcggtccccctaccc
Downstream sequence
accaccctctgcccatcgaaggttccctatgggtgcctttgcactttctggattttatgtgtataggttcatcaagtatctgcgttttgtctgcctttca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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