Basic Information
VIS ID
TVIS44004192
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
End
178035692/178066557 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1037112; hsa-mir-1182/Downstream/611192;
Nearby gene
RASAL2-AS1(No orient, 24951)
Upstream sequence
gttcacaatagggtggatactcctatgagaatctaatttcctcactaatctgacagaaggtggagctcaggcagtaacaggggctcatggtgctgctcac
Downstream sequence
ctcctgctgtgcgccccagttcctaacaggccacaaaccagtaccagtccaaggcccaggggttgggggccccATATCTAAGTGGAAATGTCCAGGAGGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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