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TVIS44004194
Basic Information
VIS ID
TVIS44004194
Fusion event
HTLV-1-SARNP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
56176644/55782860 (Hg38)
End
56176644/55782860 (Hg38)
Orient
-
Location type
Intronic
Target gene
SARNP
Nearest miRNA
hsa-mir-1244-3/Upstream/1445546; hsa-let-7i/Downstream/1411644;
Nearest TSS
ENST00000382841/Upstream/22075;
ENST00000546645/Downstream/34849;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/38860
,
chr12-CpG: 17/Downstream/34681
Upstream sequence
ttttacattttatagaagacagggtctcactatgttgcccaggcttcaaactcctTTCCAAGATGAGTTTccagccgcaatggctcatggccgtaatctc
Downstream sequence
agcactttgggaggctgaggctggcggactgcttgagtccaggagttcaagaccagcctgggcaacatggtgaaaccccatctctacaaaaaatactaaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Sample Information
×
Sample name
ATL100-CR1
Sample type
Nontumor
Age
55
Gender
Female
CpG Island Information
×
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