VISDB Viral Integration Site DataBase

VIS ID

TVIS44004218

Fusion event

HTLV-1-RAB1B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.2

Reference genome

Start

End

66039910/66272439 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-107 ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-5p ; hsa-mir-874-3p ; hsa-mir-324-5p ; hsa-mir-185-5p ; hsa-mir-15b-5p ; hsa-mir-502-5p ; hsa-mir-1233-5p ; hsa-mir-1249-5p ; hsa-mir-1273h-5p ; hsa-mir-1302 ; hsa-mir-148b-3p ; hsa-mir-149-3p ; hsa-mir-152-3p ; hsa-mir-1825 ; hsa-mir-1910-3p ; hsa-mir-214-3p ; hsa-mir-30b-3p ; hsa-mir-3126-5p ; hsa-mir-3130-5p ; hsa-mir-31-5p ; hsa-mir-3185 ; hsa-mir-3619-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3925-5p ; hsa-mir-3944-5p ; hsa-mir-4298 ; hsa-mir-4306 ; hsa-mir-4428 ; hsa-mir-4436b-3p ; hsa-mir-4482-5p ; hsa-mir-4514 ; hsa-mir-4524a-3p ; hsa-mir-4640-5p ; hsa-mir-4644 ; hsa-mir-4648 ; hsa-mir-4651 ; hsa-mir-4690-5p ; hsa-mir-4692 ; hsa-mir-4726-5p ; hsa-mir-4728-5p ; hsa-mir-4742-5p ; hsa-mir-4802-3p ; hsa-mir-552-3p ; hsa-mir-5689 ; hsa-mir-589-5p ; hsa-mir-608 ; hsa-mir-6165 ; hsa-mir-6508-3p ; hsa-mir-6511a-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6778-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6797-5p ; hsa-mir-6799-5p ; hsa-mir-6803-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6875-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7110-5p ; hsa-mir-761 ; hsa-mir-7845-5p ; hsa-mir-873-5p ; hsa-mir-942-3p

Nearest miRNA

hsa-mir-10392/Upstream/623186; hsa-let-7a-2/Downstream/661995;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/3102, chr11-CpG: 97/Downstream/5301

Upstream sequence

TGCTCCTCTGCCTACTGTCTCCTAGTGGGACACAGCGGGCCAGGAACGGTTCCGGACCATCACTTCCAGCTACTACCGGGGGGCTCATGGCATCATCGTG

Downstream sequence

GTGTATGACGTCACTGACCAGGTACTCCTGGACTAGCCATCCTCAGCTTGGCCTCCTTAGCCTTAGGTCTTTGACTCTTCTTTTTCCTCCTTCCATCCTC