Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene7178976572087266726707577193884672186618722153927221629272230261
Basic Information
VIS ID
TVIS44004243
Fusion event
HTLV-1-TRHDE integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
End
72624041/72230261 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7i/Upstream/2645438; hsa-mir-1178/Downstream/7188996;
Nearby gene
TRHDE-AS1(No orient, 23246)
Upstream sequence
TGCAAAAATAAAATTGTATTTTCTGAAGAAATTTTAATAAATATTACCTTAGACCCTATCTAGGTTTGGGTCATTAATAATGCTCTTTGTTTTCTCATCA
Downstream sequence
CTATTAACGATACCACCAGCACAGTGCTTCCGTACATTCTTACCATACTTATTACATCTATTATGATAAAGAAAGCAGCTGTCGTAACAGTTGCTTCAGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate