Basic Information
VIS ID
TVIS44004268
Fusion event
HTLV-1-C19orf54 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
41251964/40746059 (Hg38)
End
41251964/40746059 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
C19orf54
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-296-3p ; hsa-mir-769-3p ; hsa-mir-125b-5p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-10395/Upstream/376152; hsa-let-7e/Downstream/1123568;
Nearest TSS
ENST00000633603/Upstream/4379; ENST00000601253/Downstream/3494;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/28835, chr19-CpG: 75/Downstream/4353
Upstream sequence
accgtgcccgactctttttatttttagtagagatgagatcatgctatatgttgcccaggctCCAAACTCTGTGATTTGTTTTTCGCTTCAAGTCTGTTTC
Downstream sequence
CTGGGCTGTTCAACAATGAAAATCCCTTAACTGAACTTTGAATAAAACCAGGTAACAACATGCTTAAGGCCTAAAACATCACCTTGATAGTGAATCTTTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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