Basic Information
VIS ID
TVIS44004365
Fusion event
HTLV-1-LOC105376755 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
195653132/194788408 (Hg38)
End
195653132/194788408 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/5655297; hsa-mir-1244-1/Downstream/11994826;
Nearest TSS
ENST00000437798/Upstream/57813; ENST00000413290/Downstream/237962;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2592322, chr2-CpG: 150/Downstream/868423
Upstream sequence
GGTGACCCAATAGCAGGTTTGAGAAATCAGGCAAGAAAATTACTGTAAGAGTCAGAAATTACTTGTCTATTAAATAGCAattcaacaaaatattctctga
Downstream sequence
atacctacatgtactaggtatcattctgggtacatggtaaatcccttagaactcaagtaatcaaagtagagccctcatcgtgctgaaattctggtgtaga
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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