Basic Information
VIS ID
TVIS44004390
Fusion event
HTLV-1-FSTL4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
132884909/133549218 (Hg38)
End
132884909/133549218 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
FSTL4
miRNAs that regulate target gene
hsa-mir-3691-5p ; hsa-mir-432-3p ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-1193 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4472 ; hsa-mir-3175 ; hsa-mir-4447 ; hsa-mir-6878-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-7515 ; hsa-mir-194-3p ; hsa-mir-1296-3p ; hsa-mir-7845-5p ; hsa-mir-4475 ; hsa-mir-4662b ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4742-3p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-7856-5p ; hsa-mir-4503 ; hsa-mir-6792-5p
Nearest miRNA
hsa-mir-10397/Upstream/121512; hsa-mir-103a-1/Downstream/676539;
Nearest TSS
ENST00000502646/Upstream/161445; ENST00000513561/Downstream/34423;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/496541, chr5-CpG: 192/Downstream/61835
Upstream sequence
gtatctgaggatagctgtcttcctttagttttgcaaacttttttcaaccattatcccttccaatattactcttcctgttttctctctttaaccccaatta
Downstream sequence
caaatgactgagtcctccttatcctagtctccttgcctcctaaccttgatagctttgtctcctccttgcattctggttacattttcagatgtatcttcca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate