Basic Information
VIS ID
TVIS44004397
Fusion event
HTLV-1-LOC105375195 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
25384260/25344641 (Hg38)
End
25384260/25344641 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375195
Nearest miRNA
hsa-mir-1183/Upstream/3873495; hsa-mir-10399/Downstream/605278;
Nearest TSS
ENST00000635602/Upstream/17826; ENST00000607375/Downstream/15267;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/164276, chr7-CpG: 67/Downstream/507695
Nearby gene
NPVF(-116155) ;
Upstream sequence
caggaaatgtagtctctaccagggggtccatgtgcccagGAAGAAAAGAATAGGTCACAATCATTGAGACTTTGTTGTCATTGTCCTCAACGTGAGGTGG
Downstream sequence
CTTAGGAGGAAAGAAAAATGTTTTTCCCATATGAACAATAAATTACAATTAATTCAGGTGTGATTGTCTTATAATTATTCTCTGAAGATCAGCGTGGTCG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate