Basic Information
VIS ID
TVIS44004405
Fusion event
HTLV-1-LOC105375951 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1816988/1816988 (Hg38)
End
1816988/1816988 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375951
Nearest miRNA
hsa-mir-1302-9/Upstream/1786707; hsa-let-7a-1/Downstream/3033309;
Nearest TSS
ENST00000422679/Upstream/762364; ENST00000637134/Downstream/163302;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/764748, chr9-CpG: 266/Downstream/197843
Nearby gene
SMARCA2(+198231) ;
Upstream sequence
AACTTGGATGAGAGTGTGGAAATTCAACTGTTAGTTGGCTGGTAAATCAACTTGCATTACCTGTAAACTTAGGTTACCGAGGAGTTTAAATATACTATCT
Downstream sequence
TGTCTAACCTATCAGGCCAAGGATGCATCTTTTCTACATTTTCTTGCAGGTGATTCTTCTTACtttttttttttttttttttttttttttggagacagag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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