Basic Information
VIS ID
TVIS44004416
Fusion event
HTLV-1-LOC100287010 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
105000980/104384522 (Hg38)
End
105000980/104384522 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LOC100287010
Nearest miRNA
hsa-mir-1285-2/Upstream/1952156; hsa-mir-10b/Downstream/4756968;
Nearest TSS
ENST00000437798/Upstream/237293; ENST00000416008/Downstream/26679;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1647567, chr2-CpG: 44/Downstream/274608
Upstream sequence
aattctcataacaacctgtgtcaaactattttgatcctcatttcaaagttgaggcatctaaagtttcaagaggttcaaagtcacgcgccttattcatcct
Downstream sequence
tctccaactgaattcaggtggcatttcctatgggaagccactttgactcacaggacccaggtaggcatcttcctggggctgcagggcacacatgtcaccg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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