Basic Information
VIS ID
TVIS44004501
Fusion event
HTLV-1-LOC105375976 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
12129046/12129046 (Hg38)
End
12129046/12129046 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375976
Nearest miRNA
hsa-mir-101-2/Upstream/6121142; hsa-let-7a-1/Downstream/6444260;
Nearest TSS
ENST00000422679/Upstream/852732; ENST00000473763/Downstream/30101;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/510458, chr9-CpG: 28/Downstream/646441
Nearby gene
TYRP1(+564340) ;
Upstream sequence
ctacagtttttctttcttgctgaagatatttttgagtatttgtggttatttgtaacaattccatgtaaattttataattttgtttttacttctgtaatag
Downstream sequence
ttaacattggaattttgatatggattaaataaggtatgtacattgccttgtgtagtatggactttttaatttttttcttactgatttaagggatacaagt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate