Basic Information
VIS ID
TVIS44004524
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
177556493/178129492 (Hg38)
End
177556493/178129492 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/1499992; hsa-mir-1229/Downstream/1668786;
Nearest TSS
ENST00000502646/Upstream/16049; ENST00000508647/Downstream/1504;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/15259, chr5-CpG: 104/Downstream/1057
Nearby gene
RMND5B(+1469) ;
Upstream sequence
caaaaaaagaaaaagaaaaTTCAGTCTGGACCTGGGTTTGGGGTCAGTGCCTGTTCCCTCCTCCTTCCTAACCCTCACCCTTCCTCCTTAGGGCAGATGG
Downstream sequence
GCAGCTCCCATCTTCTCCCCTTCCCCCGTTCCCCAGGACAGCGACCAACACAGGGCGGCAGGGTAGGGCTGGACCCCCTCCTCCGCAGAACTGAATTCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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