Basic Information
VIS ID
TVIS44004599
Fusion event
HTLV-1-P2RX4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
121653849/121216046 (Hg38)
End
121653849/121216046 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
P2RX4
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7i/Upstream/492780; hsa-mir-3612/Downstream/228227;
Nearest TSS
ENST00000382841/Upstream/3180; ENST00000397924/Downstream/6286;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/5585, chr12-CpG: 27/Downstream/57997
Upstream sequence
AGTTCCTTAAAGGGTAGAATTCTCTTTTCTAGAAAGAGTAGCCTagggttgtccaatcttttggctttcgtgggccacactggaaggagaaattatcttg
Downstream sequence
ggccacacattaaatatgctaacactaacaatagctgatgagctaaaaaacaaactttttttgatcacacaaaaaaaaatctcataacgttttaagaaag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate