VISDB Viral Integration Site DataBase

VIS ID

TVIS44004603

Fusion event

HTLV-1-PGBD4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr15

Cytoband

q14

Reference genome

Start

End

34394377/34102176 (Hg38)

Orient

+

Location type

UTR5

Target gene

miRNAs that regulate target gene

hsa-mir-297 ; hsa-mir-3978 ; hsa-mir-3924 ; hsa-mir-567 ; hsa-mir-5093 ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-101-3p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-6867-5p ; hsa-mir-6513-3p ; hsa-mir-595 ; hsa-mir-5096 ; hsa-mir-511-5p ; hsa-mir-6740-3p ; hsa-mir-501-5p ; hsa-mir-577 ; hsa-mir-500a-5p ; hsa-mir-619-5p ; hsa-mir-5004-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-562 ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-5571-5p ; hsa-mir-5698 ; hsa-mir-3689d ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-3650 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-4485-5p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-500b-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-2681-3p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4728-5p ; hsa-mir-490-3p ; hsa-mir-582-5p ; hsa-mir-6134 ; hsa-mir-655-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6807-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7847-3p ; hsa-mir-7851-3p ; hsa-mir-96-3p

Nearest miRNA

hsa-mir-1268a/Upstream/3037035; hsa-mir-10393/Downstream/279893;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/113, chr15-CpG: 83/Downstream/107324

Upstream sequence

TCAAGTGCCTATGAAGGGGACTGCCCATGAAGTGAAAGTCAAGTGTGTGTTGCTGCGGCAGCCACGGAGGCCAAGGACCTCACGGGAGTAAAAGATGACG

Downstream sequence

AGACTGGCTTCGGGAGAAACACCATCCAGAAGAGACCTTTCAAAAAACTTCTAGAGACTCCCCAAGACGTATGAGATGAAAGGCTTCTTCTGTCTGTGTG