Basic Information
VIS ID
TVIS44004609
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
26443316/25071003 (Hg38)
End
26443316/25071003 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1991611; hsa-mir-155/Downstream/502977;
Nearest TSS
ENST00000624081/Upstream/15468; ENST00000453802/Downstream/24019;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/4072758, chr21-CpG: 28/Downstream/290791
Upstream sequence
ATAATAATTACCATTTTCCTGATCATTATAAATGTCTAGTGAAAAAAACAACTAGAATAACCCAAGATTTTTCCCCTGATGGGTTCATTATGCTCAGTGG
Downstream sequence
TTTAATATATGTCATTTTTTTAAAAAGCCTAAAGTTAAAGATTTAATTTAAATCTTAACTAGCAAATAatatgtatagatataattgcatatgtatataa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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