Basic Information
VIS ID
TVIS44004625
Fusion event
HTLV-1-ZNF717 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
75801526/75752375 (Hg38)
End
75801526/75752375 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF717
Nearest miRNA
hsa-let-7g/Upstream/14012; hsa-mir-12124/Downstream/3755512;
Nearest TSS
ENST00000440867/Upstream/77962; ENST00000475034/Downstream/32683;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/79617, chr3-CpG: 48/Downstream/32728
Upstream sequence
ataagattccagaacacggctacgagggtctgaatgtttgtccctcacataggattccagaacactgctgttggggtctgaatgtttgtccctcacatag
Downstream sequence
gattccagaacactgcttcgagggcctaaatgtctgtccctcacataagattccagcacactgctatgcggttctgaatgtcctcacataggattccaga
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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