Basic Information
VIS ID
TVIS44004651
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
63807655/63341984 (Hg38)
End
63807655/63341984 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-12132/Upstream/15000; hsa-mir-101-1/Downstream/1237863;
Nearest TSS
ENST00000473358/Upstream/17543; ENST00000487136/Downstream/25606;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11515, chr1-CpG: 73/Downstream/25454
Nearby gene
MIR6068(No orient, 15000)
Upstream sequence
TCTTGATGTGCAATGCtttttttttttttttttttttttttttACCTCATCCCTCTCTCCAGTTCAAACTGAAACTTGTCATCCACTGCCTCAGGAAAGG
Downstream sequence
GAGGCCATAAGAAACAAAATAAGTTAATTTTTTGGCTTTTGAGCACTAAAAACTTTTGACCTGGCCAAAAAGTAAAAATAAAAacacctaaaatcccagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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