VISDB Viral Integration Site DataBase

VIS ID

TVIS44004666

Fusion event

HTLV-1-LSM3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p25.1

Reference genome

Start

End

14238162/14196662 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-mir-128-3p ; hsa-mir-196a-5p ; hsa-mir-944 ; hsa-mir-3190-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6763-3p ; hsa-mir-4433b-3p ; hsa-mir-1231 ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-6504-3p ; hsa-mir-654-3p ; hsa-mir-4438 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-5587-3p ; hsa-mir-4707-5p ; hsa-mir-4731-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6809-3p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-675-3p ; hsa-mir-889-3p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4698 ; hsa-mir-8063

Nearest miRNA

hsa-mir-12127/Upstream/3802100; hsa-let-7g/Downstream/1299577;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/17754, chr3-CpG: 39/Downstream/101087

Upstream sequence

acagttactggtccctaacagtggtgaatcccactgggaaggcatgaatgctccctgtcctggtagcagcagaaatccctcaattagatcAAATATGTCC

Downstream sequence

CATCCAATGTTTGGAACTTATACTaaatttaattgtgcgtcctacatctttatttgcaaaatctggcaaccctaAATGGGGTCCGCAGAGCTTTCAGGGC