Basic Information
VIS ID
TVIS44004673
Fusion event
HTLV-1-LOC107986901 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
115974661/114962432 (Hg38)
End
115974661/114962432 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986901
Nearest miRNA
hsa-mir-12123/Upstream/2318849; hsa-mir-10400/Downstream/1912296;
Nearest TSS
ENST00000518652/Upstream/680296; ENST00000415088/Downstream/529789;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1529576, chr8-CpG: 33/Downstream/685773
Nearby gene
TRPS1(-446063) ;
Upstream sequence
TTGCTTGTCATGTGGATATTGAATGAAAGGGTGTTACATTTTTTTCTCTCTCCAGTCAATGTAAAAAAATAAAAttccctttgtgagtgcgctacaagaa
Downstream sequence
aaagcaacaatggcaaacatgtttcttaaaccagagggaatgtattacatttctcaaaaataaaagccaaaatacacaatgctgtatcagaaataccata
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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