Basic Information
VIS ID
TVIS44004736
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
33216329/35636365 (Hg38)
End
33216329/35636365 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA18A
Nearest miRNA
hsa-mir-1-2/Upstream/44559; hsa-mir-122/Downstream/268453;
Nearest TSS
ENST00000575820/Upstream/8936; ENST00000591081/Downstream/18195;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/54065, chr18-CpG: 53/Downstream/313600
Nearby gene
GALNT1(+18204) ;
Upstream sequence
cctcgacttacttgactctggaaTGTCTTTAGTGAAGACTGTCTCAGTTATTGGTCCTGCAATAACAGTGTTCTTTAGAACAAAATGGACCAGAGGGAAA
Downstream sequence
GACTGTCTTAAGGACAGGGAAAGGCCATTAGAGGGTTTTAGGTCAAAGAGAGACAGAAACAAAACAACTGTAGAAAAAACTTACTTTAAACAAACAAAAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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