Basic Information
VIS ID
TVIS44004792
Fusion event
HTLV-1-XRCC1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
44067795/43563643 (Hg38)
End
44067795/43563643 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
XRCC1
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-92b-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-142-3p ; hsa-mir-5700
Nearest miRNA
hsa-mir-10395/Upstream/1212438; hsa-let-7e/Downstream/1090043;
Nearest TSS
ENST00000633603/Upstream/2694; ENST00000600242/Downstream/10995;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/28039, chr19-CpG: 38/Downstream/11787
Upstream sequence
TGCTCCCCAGGCCAGGcttggtgactttccaccagccacaacggcctcccttctgtgccaagaacagtctggctccttcccacctcagggcctctgcacc
Downstream sequence
tgccaatccccctgcctagaccactcttccctcaaacatatccatagctgggtaaaagtttgccttctgtgcttcaggtgcccactcagatgtcacttca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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