Basic Information
VIS ID
TVIS44004797
Fusion event
HTLV-1-UBE2E2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23317632/23276141 (Hg38)
End
23317632/23276141 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2E2
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-12127/Upstream/3138500; hsa-let-7g/Downstream/2388732;
Nearest TSS
ENST00000440867/Upstream/67441; ENST00000613545/Downstream/223465;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/72584, chr3-CpG: 66/Downstream/530060
Upstream sequence
AAGTAGAGACAAGCCTATTTAAAAAAAATTTCTATGTCTTTTTATCTGGCTTGTGATGCCAGTGAAAGTAAGGTGGCTATCTGGCATGTACACAGATTGG
Downstream sequence
TTGTTGGAGAGCCTTCATGATTTTCCATTATTCATTTCCTTCAGACAGCTCCTTTAGTAACTTAGGTACATCCTACCTTCCCCCACCAAGACACAATCAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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