VISDB Viral Integration Site DataBase

VIS ID

TVIS44004834

Fusion event

HTLV-1-RNF152 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.33

Reference genome

Start

End

59515606/61848373 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-652-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-526b-5p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-513a-5p ; hsa-mir-4305 ; hsa-mir-3681-3p ; hsa-mir-1288-5p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5694 ; hsa-mir-101-3p ; hsa-mir-5683 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-514a-3p ; hsa-mir-574-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6867-5p ; hsa-mir-3650 ; hsa-mir-223-5p ; hsa-mir-134-3p ; hsa-mir-7114-5p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-342-3p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5009-3p ; hsa-mir-5692a ; hsa-mir-7851-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4314 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-5186 ; hsa-mir-873-3p ; hsa-mir-6857-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-3126-3p ; hsa-mir-4499

Nearest miRNA

hsa-mir-1-2/Upstream/3397215; hsa-mir-5011/Downstream/5233211;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/293620, chr18-CpG: 129/Downstream/45103

Upstream sequence

GCTAAAGTTTTCTAGCTTTCTCAATATTTTTGCAAGATATCAGTGCTTCCACAATTTTTCTAACCATTAGTAATTATGCCACATTTTTTGAATGATTCCA

Downstream sequence

TAGCCTCAAAGAGAAGCTCTAGGTTTATATGTCAAATATAATCAAAGAAAAAAAAATCAATACCACCCTGCTACCATCACCTTCCCCCAGATAAAACCAG